HAPLOPOP

HAPLOtypes for POPulation inference

The software helps to infer haplotypes within genomic windows of fixed size in order to improve accurate population assignment and structure inferences.

HAPLOPOP utilizes the Gain of Informativeness for Assignment statistic that provides a criterion to decide whether markers should be combined into haplotypes.

The software was introduced in Duforet-Frebourg et al. (2015) and is available here.