Data used in Schlebusch_etal 2012 (Science)
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File format is tped, which can be imported and used in e.g. PLINK

Files include:

Schlebusch_etal_Science2012_autosomal_unphased.tfam  
Schlebusch_etal_Science2012_autosomal_unphased.tped
###autosomal data for chr 1 to 22
###this data was filtered for 10% SNP missingness and 15% individual missingness as well as for SNPs out of HWE equilibrium in both two subgroups (Khoe-San and Bantu-speakers)
###first and second degree relatives removed (see Schlebusch_EtAl 2012 for full details on filtering)


Schlebusch_etal_Science2012_autosomal_phased.tfam       
Schlebusch_etal_Science2012_autosomal_phased.tped
###this data is the same as the filtered autosomal datasets above with the exeption that the data is phased and missing data is imputed (see Schlebusch_EtAl 2012 for full details on phasing)


Schlebusch_etal_Science2012_mito.tfam
Schlebusch_etal_Science2012_mito.tped
### mtDNA SNPs. Filtered as above but missing data NOT imputed


Schlebusch_etal_Science2012_ychr.tfam
Schlebusch_etal_Science2012_ychr.tped
### Y-chromosome SNPs SNPs. Filtered as above but missing data NOT imputed

Schlebusch_etal_Science2012_listadmixed_rem.txt
### A list of individuals to exclude from the dataset to obtain a dataset where recently admixed individuals were removed. See Section 1.3 in supplement for procedure. Compare Figs S16 vs S17 (ADMIXTURE) and Figs S4 vs S5 (PCA) for results


####contact me (Carina Schlebusch: cschlebu@gmail.com) or Mattias Jakobsson (mattias.jakobsson@ebc.uu.se) for any further questions