CLUMPP

CLUster Matching and Permutation Program

CLUMPP is a program that deals with label switching and multimodality problems in population-genetic cluster analyses. CLUMPP permutes the clusters output by independent runs of clustering programs such as structure, TESS, or BAPS, so that they match up as closely as possible. The user has the option of choosing one of three algorithms for aligning replicates, with a tradeoff of speed and similarity to the optimal alignment. A program note describing CLUMPP was published in Jakobsson & Rosenberg (2007). CLUMPP was written by Mattias Jakobsson.

To be redirected to the CLUMPP page at the Rosenbergs Lab, Stanford University, click here.

Comments or problems with CLUMPP should be sent to Mattias Jakobsson.